stssearch

stssearch

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stssearch searches a DNA sequence database with a set of STS primers and reports expected matches and possible mismatches.

Here is a sample session with stssearch:

% stssearch Input sequence(s): embl:eclac* Primer file: lac.primers

Mandatory qualifiers:

[-sequences] (seqall)

Sequence database USA.

[-primers] (infile)

Primer file.

[-out] (outfile)

Output filename.