stssearch searches a DNA sequence database with a set of STS primers and reports expected matches and possible mismatches.

Here is a sample session with stssearch:

% stssearch Input sequence(s): embl:eclac* Primer file: lac.primers

Mandatory qualifiers:

[-sequences] (seqall)

Sequence database USA.

[-primers] (infile)

Primer file.

[-out] (outfile)

Output filename.

Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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