seqsort

seqsort

seqsort reads multiple files of hits and writes a non-ambiguous file of hits (scop families file) plus a validation file.

This is part of Jon Ison's protein structure analysis package. This package is still being developed. Please ignore this program until further details can be documented. All further queries should go to Jon Ison (jison@hgmp.mrc.ac.uk).

Here is a sample session with seqsort:

% seqsort

Mandatory qualifiers (bold if not always prompted):

-mode (menu)

Select mode.

-psipath (string)

Location of scop hits files (input).

-psiextn (string)

Extension of scop hits files.

-swisspath (string)

Location of seqwords hits files.

-swissextn (string)

Extension of seqwords input files.

-psifile (string)

Name of file containing processed scop hits file (input).

-swissfile (string)

Name of file containing processed seqwords hits file (input).

-overlap (integer)

number of overlapping residues required for merging of two hits.

[-hitsf] (outfile)

Name of scop hits file (output).

[-validf] (outfile)

Name of validation file (output).



Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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