seqwords

seqwords

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seqwords generates a file of hits for scop families by searching SWISS-PROT with keywords.

This is part of Jon Ison's protein structure analysis package. This package is still being developed. Please ignore this program until further details can be documented. All further queries should go to Jon Ison ([e-mail]).

Here is a sample session with seqwords:

% seqwords

Mandatory qualifiers:

[-keyfile] (infile)

Name of keywords file (input).

-spfile (infile)

Name of SWISS-PROT database (input).

[-outfile] (outfile)

Name of seqwords hits file (output).