revseq

revseq

revseq takes a sequence and outputs the reverse complement (also known as the anti-sense or reverse sense) sequence.

To create the reverse sense of the sequence rcr.seq and output to the file rcr.rev:

% revseq rcr.seq rcr.rev

To create the complement of the sequence rcr.seq and output to the file rcr.rev:

% revseq rcr.seq rcr.rev -norev

To create the reverse of the sequence rcr.seq and output to the file rcr.rev:

% revseq rcr.seq rcr.rev -nocomp

Mandatory qualifiers:

[-sequence] (seqall)

Sequence database USA.

[-outseq] (seqoutall)

Output sequence(s) USA.

Advanced qualifiers:

-[no]reverse (boolean)

Set this to be false if you do not want to reverse the output sequence.

-[no]complement (boolean)

Set this to be false if you do not want to complement the output sequence.



Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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