scopalign

scopalign

scopalign generate alignments for families in a scop classification file by using STAMP.

Here is a sample session with scopalign:

% scopalign

Mandatory qualifiers:

[-scopf] (infile)

Name of scop classification file (EMBL format input).

[-path] (string)

Location of scop structure-based sequence alignment files (output).

[-extn] (string)

Extension of scop structure-based sequence alignment files (output).

[-pathc] (string)

Location of scop structure alignment files (output).

[-extnc] (string)

Extension of scop structure alignment files (output).



Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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