[SYMBOL] [A] [B] [C] [D] [E] [F] [G] [H] [I] [J] [K] [L] [M] [N] [O] [P] [Q] [R] [S] [T] [U] [V] [W] [Y] FASTA flat file database, indexing open source tools and feature formats, EMBOSS feature tables DDBJ/EMBL/GenBank extracting CDS/mRNA/translations from SWISS-PROT writing representation of to standard output features locations masking qualifiers tables of [See feature tables] field definitions DDBJ flat files EMBL flat files GenBank flat files Pfam flat files PROSITE flat files SWISS-PROT flat files files ABI sequence trace ASCII, removing carriage returns from codon usage table coordinate writing protein-heterogen contact data files from dinucleotides, counting number of domains coordinate files, writing from protein coordinate files EMBL CD-ROM format index building from BLAST database building from FASTA flat file database building from flat file database building from GCG-format database EMBL-like format, writing SCOP classification to EMBOSS data, determining directories that can hold enzymatic data of, plottng FASTA sequence entries in zzz [See also FASTA][See also FASTA] flat [See flat files] hexanucleotides, counting number of inter-chain residue-residue contact data writing intra-chain residue-residue contact data mass spectrometry result PDB, parsing profile matrix, creating from nucleic acid sequences protein coordinate writing domains coordinate files from writing from PDB files SCOP classification converting/writing to EMBL-like format files removing low-resolution domains from removing redundant domains from SWISS-PROT:PDB-equivalence, converting to EMBL-like format trinucleotides, counting number of typing sequences into findkm program (EMBOSS) flat file databases, indexing flat files DDBJ example EMBL example GenBank example Pfam example PROSITE example SWISS-PROT example flatworm mitochondrial code formatdb program formatdb program (BLAST) freak program (EMBOSS) frequency tables, codon funky program (EMBOSS) fuzznuc program (EMBOSS) fuzzpro program (EMBOSS) fuzztran program (EMBOSS) |