infoseq is a small utility that lists the USA, name, accession number, type (nucleic or protein), length, percentage C+G, and/or description of a sequence. Display information on a sequence: % infoseq embl:paamir Don't display the USA of a sequence: % infoseq embl:paamir -nousa Display only the name and length of a sequence: % infoseq embl:paamir -only -name -length Display only the description of a sequence: % infoseq embl:paamir -only -desc Display the type of a sequence: % infoseq embl:paamir -only -type Display information formatted with HTML: % infoseq embl:paamir -html Mandatory qualifiers: - [-sequence] (seqall)
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Sequence database USA. Optional qualifiers: - -outfile (outfile)
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If you enter the name of a file here, this program will write the sequence details into that file. - -html (boolean)
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Format output as an HTML table. Advanced qualifiers: - -only (boolean)
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This is a way of shortening the command line if you only want a few things to be displayed. Instead of specifying -nohead -noname -noacc -notype -nopgc -nodesc to get only the length output, you can specify -only -length. - -heading (boolean)
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Display column headings. - -usa (boolean)
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Display the USA of the sequence. - -name (boolean)
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Display name column. - -accession (boolean)
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Display accession column. - -gi (boolean)
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Display GI column. - -version (boolean)
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Display version column. - -type (boolean)
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Display type column. - -length (boolean)
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Display length column. - -pgc (boolean)
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Display percent GC content column. - -description (boolean)
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Display description column. | 