dreg searches for matches of a regular expression to a nucleic acid sequence.

Here is a sample session with dreg:

% dreg Input sequence: embl:paamir Output file [paamir.dreg]:  Regular expression pattern: ggtacc

Mandatory qualifiers:

[-sequence] (seqall)

Sequence database USA.

[-pattern] (regexp)

Regular expression pattern.

[-outfile] (outfile)

Output filename.

Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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