marscan finds MAR/SAR sites in nucleic sequences.

Here is a sample session with marscan:

% marscan marscan Finds MAR/SAR sites in nucleic sequences Input sequence(s): EMBL:HSHBB Output file [hshbb.marscan]:

Mandatory qualifiers:

[-sequence] (seqall)

Sequence database USA.

[-outfile] (report)

File for output of MAR/SAR recognition signature (MRS) regions. This contains details of the MRS in normal GFF format. The MRS consists of two recognition sites: one of 8 bp and one of 16 bp on either sense strand of the genomic DNA, within 200 bp of one another.

Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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