checktrans reads a protein sequence containing stops and writes a report of any open reading frames greater than a minimum size. The input sequence is typically produced by transeq. Here is a sample session with checktrans, using the output from a transeq run: % transeq embl:paamir paamir.pep -auto % checktrans Input sequence: paamir.pep Minimum ORF Length to report [100]: 30 Output file [paamir_1.checktrans]: Output sequence [paamir_1.fasta]: Mandatory qualifiers:
Advanced qualifiers:
|