charge reads a protein sequence and writes a file (or plots a graph) of the charges to the amino acids within a window of specified length as the window is moved along the sequence.

Here is a sample session with charge:

% charge sw:hbb_human  Protein charge plot Output file [hbb_human.charge]:

Mandatory qualifiers (bold if not always prompted):

[-seqall] (seqall)

Sequence database USA.

-graph (xygraph)

Graph type.

-outfile (outfile)

Output filename.

Optional qualifiers:

-window (integer)


Advanced qualifiers:

-aadata (string)

Amino acid property data filename.

-plot (boolean)

Produce graphic.

Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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