aaextractindex extracts information from the AAINDEX database for use by pepwindow and pepwindowall. AAINDEX is a database containing properties of amino acids. The AAINDEX database file aaindex1 can be downloaded from ftp://ftp.genome.ad.jp/pub/db/genomenet/aaindex/aaindex1.

Here is a sample session with aaindexextract:

% aaindexextract Extract data from AAINDEX Full pathname of file aaindex1: ~/aaindex1

Mandatory qualifiers:

[-inf] (infile)

Full pathname of file aaindex1.

Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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