[SYMBOL] [A] [B] [C] [D] [E] [F] [G] [H] [I] [J] [K] [L] [M] [N] [O] [P] [Q] [R] [S] [T] [U] [V] [W] [Y] cai program (EMBOSS) carriage returns, removing from ASCII files cDNA sequences, producing from aligned protein sequences CGI web server, Readseq and change indicators, SWISS-PROT feature table chaos program (EMBOSS) charge program (EMBOSS) checktrans program (EMBOSS) chips program (EMBOSS) chlorophycean mitochondrial code ciliate code cirdna program (EMBOSS) ClustalW command-line options emma program as interface to codcmp program (EMBOSS) code, genetic alternative flatworm mitochondrial alternative yeast nuclear ascidian mitochondrial bacterial blepharisma nuclear chlorophycean mitochondrial ciliate coelenterate mitochondrial dasycladacean echinoderm euplotid nuclear flatworm mitochondrial hexamita nuclear invertebrate mitochondrial mold mycoplasma plant plastid protozoan scenedesmus obliquus mitochondrial spiroplasma standard thraustochytrium mitochondrial trematode mitochondrial yeast mitochondrial coderet program (EMBOSS) codes coding sequences, calculating codon frequency table from nucleotide Codon Adaptation Index, calculating codon frequency tables calculating from coding frequency codon usage table files coelenterate mitochondrial code coiled-coil structures, calculating probability of colon (:), EMBOSS USA syntax command-line options BLAST BLAT ClustalW MEME Readseq comments, FASTA compseq program (EMBOSS) cons program (EMBOSS) consensus sequence, calculating from multiple sequence alignment contacts program (EMBOSS) coordinate files reading writing protein-heterogen contact data files from CpG regions, identifying CPGISLE database, producing entry format reports cpgplot program (EMBOSS) cpgreport program (EMBOSS) crystalball program Ctrl-A characters, NCBI nonredundant database syntax cusp program (EMBOSS) cut sites, predicting in DNA sequences CUTG, extracting data from cutgextract program (EMBOSS) cutseq program (EMBOSS) |