coderet

coderet

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coderet extracts CDS, mRNA and translations from feature tables.

Here is a sample session with coderet. To extract all of the CDS, mRNA and the protein translations, type:

% coderet Extract CDS, mRNA and translations from feature tables Input sequence(s): embl:X03487 Output sequence [hsferg1.fasta]:

Mandatory qualifiers:

[-seqall] (seqall)

Sequence database USA.

[-seqout] (seqout)

Output sequence USA.

Advanced qualifiers:

-[no]cds (boolean)

Extract CDS sequences.

-[no]mrna (boolean)

Extract mrna sequences.

-[no]translation (boolean)

Extract translated sequences.