palindrome looks for inverted repeats (stem loops) in a nucleotide sequence. Here is a sample session with palindrome. Because there are a number of overlapping possibilities in this sequence, we choose a longer minimum repeat length: % palindrome Input sequence: embl:hsts1 Enter minimum length of palindrome [10]: 15 Enter maximum length of palindrome [100]: Enter maximum gap between repeated regions [100]: Number of mismatches allowed [0]: Output file [hsts1.pal]: Report overlapping matches [Y]: Mandatory qualifiers:
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