megamerger takes two overlapping sequences and merges them into one sequence. It could thus be regarded as the opposite of what splitter does.

Here is a sample session with megamerger. There are many mismatches between these two sequences and the merged sequence should therefore be treated with great caution:

% megamerger embl:ap000504 embl:af129756 Merge two large overlapping nucleic acid sequences Word size [20]: Output sequence [ap000504.merged]: Output file [ap000504.megamerger]:

Mandatory qualifiers:

[-seqa] (sequence)

Sequence USA.

[-seqb] (sequence)

Sequence USA.

-wordsize (integer)

Word size.

[-outseq] (seqout)

Output sequence USA.

[-report] (outfile)

Output report.

Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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