matcher compares two sequences looking for local sequence similarities, using a rigorous algorithm. Here is a sample session with matcher: % matcher tsw:hba_human tsw:hbb_human Finds the best local alignments between two sequences Output file [hba_human.matcher]: Here is an example to find the 10 best alignments: % matcher tsw:hba_human tsw:hbb_human -alt 10 Finds the best local alignments between two sequences Output file [hba_human.matcher]: hba_human.matcher10 Mandatory qualifiers:
Optional qualifiers:
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