hmmemit

hmmemit Generate sequences from a profile HMM.

hmmemit [options] hmmfile

Options

-a

Write the generated sequences in an aligned format (SELEX) rather than FASTA.

-c

Predict a single majority-rule consensus sequence instead of sampling sequences from the HMM's probability distribution.

-h

Print brief help.

-n n

Generate n sequences. Default is 10.

-o f

Save the synthetic sequences to file f rather than writing them to stdout.

-q

Quiet; suppress all output except for the sequences themselves.



Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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