hmmbuild [options] hmmfile alignfile
Configure the model for finding multiple domains per sequence, where each domain can be a local (fragmentary) alignment.
Configure the model for finding a single global alignment to a target sequence.
Print brief help.
Name this HMM s.
Re-save the starting alignment to f, in Stockholm format.
Configure the model for finding a single local alignment per target sequence.
Append this model to an existing hmmfile rather than creating hmmfile.
Force overwriting of an existing hmmfile.