hmmalign

hmmalign Align sequences to an HMM profile.

hmmalign [options] hmmfile seqfile

Options

-h

Print brief help; includes version number and summary of all options, including expert options.

-m

Include in the alignment only those symbols aligned to match states. Do not show symbols assigned to insert states.

-o f

Save alignment to file f instead of to standard output.

-q

Quiet; suppress all output except the alignment itself.



Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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