trimseq is used to tidy up the ends of sequences, removing all the bits that you would really rather were not published. Tidy up the sequence ends, stopping at the first wanted code: % trimseq xyz.seq xyz_clean.seq -window 1 -percent 100 Tidy up the sequence ends, removing poor bits at the ends: % trimseq xyz.seq xyz_clean.seq -window 5 -percent 40 Tidy up the sequence ends, removing very poor bits at the ends: % trimseq xyz.seq xyz_clean.seq -window 20 -percent 80 Tidy up the sequence ends, removing even maginally poor bits at the ends: % trimseq xyz.seq xyz_clean.seq -window 20 -percent 10 Tidy up the sequence ends, removing poor bits including ambiguity codes: % trimseq xyz.seq xyz_clean.seq -window 20 -percent 50 -strict Tidy up the sequence ends, removing asterisks from a protein end: % trimseq xyz.seq xyz_clean.seq -window 1 -percent 100 -star Tidy up the sequence ends, removing poor bits at only the left end: % trimseq xyz.seq xyz_clean.seq -window 20 -percent 50 -noright Mandatory qualifiers:
Optional qualifiers:
Advanced qualifiers:
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