seqmatchall does an all-against-all pairwise comparison of words (fragments of the sequences of a specified fixed size) in a set of sequences and finds regions of similarity within any two sequences. Here is a sample session with seqmatchall. We use an increased word size to avoid accidental matches: % seqmatchall Does an all-against-all comparison of a set of sequences Input sequence set: embl:eclac* Word size [4]: 15 Output file [outfile.seqmatchall]: Mandatory qualifiers:
|