shuffleseq takes a sequence as input and outputs one or more sequences whose order has been randomly shuffled. No bases or residues are changed, only their order.

Here is a sample session with shuffleseq making two randomised copies of the input sequence:

% shuffleseq -shuffle 2 Shuffles a set of sequences maintaining composition Input sequence(s): embl:mmam Output sequence [mmam.fasta]:

Mandatory qualifiers:

[-sequence] (seqall)

Sequence database USA.

[-outseq] (seqoutall)

Output sequence(s) USA.

Advanced qualifiers:

-shuffle (integer)

Number of shuffles.

Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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