sigcleave

sigcleave

sigcleave reports protein signal cleavage sites.

Here is a sample session with sigcleave:

% sigcleave Reports peptide signal cleavage sites Input sequence: sw:ach2_drome Output file [ach2_drome.out]: Minimum weight [3.5]:

Mandatory qualifiers:

[-sequence] (seqall)

Sequence database USA.

-minweight (float)

Minimum scoring weight value for the predicted cleavage site.

[-outfile] (report)

Output report filename.

Optional qualifiers:

-prokaryote (boolean)

Specifies the sequence is prokaryotic and changes the default scoring data filename.

Advanced qualifiers:

-pval (integer)

Specifies the number of columns before the residue at the cleavage site in the weight matrix table.

-nval (integer)

Specifies the number of columns after the residue at the cleavage site in the weight matrix table.



Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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