rebaseextract derives recognition site and cleavage information from the withrefm file of an REBASE distribution. It creates three files in the EMBOSS data subdirectory REBASE: a pattern file, reference file, and supplier file.

Here is a sample session with rebaseextract:

% rebaseextract Full pathname of WITHREFM: /data/rebase/withrefm.904

Mandatory qualifiers:

[-inf] (infile)

Full pathname of WITHREFM.

Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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