plotorf

plotorf

plotorf plots potential open reading frames.

Here is a sample session with plotorf:

% plotorf Plot potential open reading frames Input sequence: embl:paamir Graph type [x11]:

Specifying your own START and STOP codons with a mitochondrial sequence:

% plotorf -start ATT,ATC,ATA,ATG,GTG -stop TAA,TAG,AGA,AGG Plot potential open reading frames Input sequence: mito.seq Graph type [x11]:

Mandatory qualifiers:

[-sequence] (sequence)

Sequence USA.

-graph (xygraph)

Graph type.

Advanced qualifiers:

-start (string)

Start codons.

-stop (string)

Stop codons.



Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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