hmmgen generates a hidden Markov model for each alignment in a directory.

Here is a sample session with hmmgen:

% hmmgen

Mandatory qualifiers:

-infpath (string)

Location of sequence alignment files (input).

-infextn (string)

Extension of sequence alignment files.

-outfpath (string)

Location of HMM files (output).

-outfextn (string)

Extension of HMM files.

Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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