Table of content
|
Mastering Perl for Bioinformatics Authors: Tisdall J.D. Published year: 2003 Pages: 1/156 |
 |
- 1
- 2
- Main Page
- Main Page
- Table of content
- Copyright
- Foreword
- Preface
- About This Book
- What You Need to Know to Use This Book
- Organization of This Book
- Conventions Used in This Book
- Comments and Questions
- Acknowledgments
- Part I: Object-Oriented Programming in Perl
- Chapter 1. Modular Programming with Perl
- 1.1 What Is a Module?
- 1.2 Why Perl Modules?
- 1.3 Namespaces
- 1.4 Packages
- 1.5 Defining Modules
- 1.6 Storing Modules
- 1.7 Writing Your First Perl Module
- 1.8 Using Modules
- 1.9 CPAN Modules
- 1.10 Exercises
- Chapter 2. Data Structures and String Algorithms
- 2.1 Basic Perl Data Types
- 2.2 References
- 2.3 Matrices
- 2.4 Complex Data Structures
- 2.5 Printing Complex Data Structures
- 2.6 Data Structures in Action
- 2.7 Dynamic Programming
- 2.8 Approximate String Matching
- 2.9 Resources
- 2.10 Exercises
- Chapter 3. Object-Oriented Programming in Perl
- 3.1 What Is Object-Oriented Programming?
- 3.2 Using Perl Classes (Without Writing Them)
- 3.3 Objects, Methods, and Classes in Perl
- 3.4 Arrow Notation (-)
- 3.5 Gene1: An Example of a Perl Class
- 3.6 Details of the Gene1 Class
- 3.7 Gene2.pm: A Second Example of a Perl Class
- 3.8 Gene3.pm: A Third Example of a Perl Class
- 3.9 How AUTOLOAD Works
- 3.10 Cleaning Up Unused Objects with DESTROY
- 3.11 Gene.pm: A Fourth Example of a Perl Class
- 3.12 How to Document a Perl Class with POD
- 3.13 Additional Topics
- 3.14 Resources
- 3.15 Exercises
- Chapter 4. Sequence Formats and Inheritance
- 4.1 Inheritance
- 4.2 FileIO.pm: A Class to Read and Write Files
- 4.3 SeqFileIO.pm: Sequence File Formats
- 4.4 Resources
- 4.5 Exercises
- Chapter 5. A Class for Restriction Enzymes
- 5.1 Envisioning an Object
- 5.2 Rebase.pm: A Class Module
- 5.3 Restriction.pm: Finding Recognition Sites
- 5.4 Drawing Restriction Maps
- 5.5 Resources
- 5.6 Exercises
- Part II: Perl and Bioinformatics
- Chapter 6. Perl and Relational Databases
- 6.1 One Perl, Many Databases
- 6.2 Popular Relational Databases
- 6.3 Relational Database Definitions
- 6.4 Structured Query Language
- 6.5 Administering Your Database
- 6.6 Relational Database Design
- 6.7 Perl DBI and DBD Interface Modules
- 6.8 A Rebase Database Implementation
- 6.9 Additional Topics
- 6.10 Resources
- 6.11 Exercises
- Chapter 7. Perl and the Web
- 7.1 How the Web Works
- 7.2 Web Servers and Browsers
- 1
- 2
|
Mastering Perl for Bioinformatics Authors: Tisdall J.D. Published year: 2003 Pages: 1/156 |
|