degapseq

degapseq

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degapseq reads one or more sequences, eliminates gap characters, and writes them out again. This process removes gaps from aligned sequences.

Here is a sample session with degapseq:

% degapseq alignment.seq nogaps.seq

Mandatory qualifiers:

[-sequence] (seqall)

Sequence database USA.

[-outseq] (seqoutall)

Output sequence(s) USA.