cutseq

cutseq

---

cutseq allows you to cut out a region from your sequence by specifying the begin and end positions of the sequence to remove.

To remove bases 10 to 12 from a sequence gatta.seq and write to the new sequence file gatta2.seq:

% cutseq gatta.seq gatta2.seq -from=10 -to=12

To remove the first 20 bases from hatta.seq and write it to jsh.seq:

% cutseq -seq=hatta.seq -from=1 -to=20 -out=jsh.seq

Mandatory qualifiers:

[-sequence] (sequence)

Sequence USA.

-from (integer)

This is the start position (inclusive) of the section of the sequence that you want to remove.

-to (integer)

This is the end position (inclusive) of the section of the sequence that you want to remove.

[-outseq] (seqout)

Output sequence USA.