Index D

[SYMBOL] [A] [B] [C] [D] [E] [F] [G] [H] [I] [J] [K] [L] [M] [N] [O] [P] [Q] [R] [S] [T] [U] [V] [W] [Y]

dan program (EMBOSS) 
dasycladacean code 
databases
    BLAST, indexing 
    CPGISLE, producing entry format reports 
    DNA sequence, searching 
    EMBOSS, searching for sequences with specified IDs or numbers 
    PRINTS 
        preprocessing for use with PSCAN 
    PROSITE motif 
    REBASE
        predicting cut sites in DNA sequences 
        searching for restriction enzymes 
    sequences, table listing ways to access 
dbiblast program (EMBOSS) 
dbifasta program (EMBOSS) 
dbiflat program (EMBOSS) 
dbigcg program (EMBOSS) 
DDBJ (DNA Data Bank of Japan) 
    feature table  [See DDBJ/EMBL/GenBank feature key table]
    flat files
        example 
        field definitions 
    locations  [See DDBJ/EMBL/GenBank location examples table]
DDBJ/EMBL/GenBank feature table 
DDBJ/EMBL/GenBank location examples table 
DDBJ/EMBL/GenBank qualifier table 
degapseq program (EMBOSS) 
description lines, FASTA 
descseq program (EMBOSS) 
dichet program (EMBOSS) 
diffseq program (EMBOSS) 
digest program (EMBOSS) 
dinucleotide CG, scanning for 
dinucleotides, determining number of in files 
distmat program (EMBOSS) 
DNA constructs 
    linear maps of, drawing 
DNA Data Bank of Japan  [See DDBJ]
DNA double helixes, predicting bending of 
DNA sequence databases, searching 
DNA sequences
    displaying 
    predicting cut sites in 
    predicting twisting of 
domainer program (EMBOSS) 
domains coordinate files, writing from protein coordinate files 
dotmatcher program (EMBOSS) 
dotpath program (EMBOSS) 
dottup program (EMBOSS) 
dreg program (EMBOSS)