Chapter 5. A Class for Restriction Enzymes

In this chapter, you'll learn how to write an object-oriented class that handles restriction enzymes using the modules from the previous chapter as part of an interface to the Restriction Enzyme Database (Rebase). I'll develop a class that finds restriction sites in DNA sequence data. In my book Beginning Perl for Bioinformatics , I presented code that extracts information from Rebase and uses it to make restriction maps of DNA sequence data. In this chapter, I'll adapt and extend that software (or ideas from the accompanying exercises) in an object-oriented fashion. (All code is shown here and is available from this book's web site.)