cirdna

cirdna

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cirdna draws circular maps of DNA constructs.

Here is a sample session with cirdna:

% cirdna Draws circular maps of DNA constructs Graph type [x11]: Input file [inputfile]: data.cirp do you want a ruler (Y or N) [Y]: type of blocks (enter Open, Filled, or Outline) [Filled]: ticks inside or outside the circle (enter In or Out) [Out]: text inside or outside the blocks (enter In or Out) [In]:

Mandatory qualifiers:

-graphout (graph)

Graph type.

-inputfile (infile)

Input file containing mapping data.

-ruler (string)

Do you want a ruler (Y or N)?

-blocktype (string)

Type of blocks: Open, Gilled, or Outline. Outline draws filled blocks surrounded by a black border.

-posticks (string)

Ticks inside or outside the circle (enter In or Out).

-posblocks (string)

Text inside or outside the blocks (enter In or out).

Optional qualifiers:

-originangle (float)

Position of the molecule's origin on the circle (enter a number in the range 0-360).

-intersymbol (string)

Do you want horizontal junctions between blocks (Y or N)?

-intercolor (integer)

Color of junctions between blocks (enter a color number).

-interticks (string)

Do you want horizontal junctions between ticks (Y or N)?

-gapsize (integer)

Interval between ticks in the ruler (enter an integer).

-ticklines (string)

Do you want vertical lines at the ruler's ticks (Y or N)?

-textheight (float)

Height of text; enter a number less than or greater than one to decrease or increase the size, respectively.

-textlength (float)

Length of text; enter a number less than or greater than one to decrease or increase the size, respectively.

-tickheight (float)

Height of ticks; enter a number less than or greater than one to decrease or increase the size, respectively.

-blockheight (float)

Height of blocks; enter a number less than or greater than one to decrease or increase the size, respectively.

-rangeheight (float)

Height of range ends; enter a number less than or greater than one to decrease or increase the size, respectively.

-gapgroup (float)

Space between groups; enter a number less than or greater than one to decrease or increase the size, respectively.

-postext (float)

Space between text and ticks, blocks, and ranges; enter a number less than or greater than one to decrease or increase the size, respectively.