3.2 SWISS-PROT Field Definitions

The field codes found in a SWISS-PROT (or TrEMBL) sequence flat file are used to help arrange the information for human readabilty and machine-based parsing. There are several SWISS-PROT field codes found in a sequence flat file; they are represented by two-letter abbreviations. Table 3-1 summarizes the contents of each field code.

Table 3-1. SWISS-PROT field definititions

Line code

Content

ID

Identification

AC

Accession number(s)

DT

Date

DE

Description

GN

Gene name(s)

OS

Organism species

OG

Organelle

OC

Organism classification

OX

Taxonomy cross-reference(s)

RN

Reference number

RP

Reference position

RC

Reference comment(s)

RX

Reference cross-reference(s)

RA

Reference authors

RT

Reference title

RL

Reference location

CC

Comments or notes

DR

Database cross-references

KW

Keywords

FT

Feature table data

SQ

Sequence header

 

(blanks) sequence data

//

Termination line



Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

Similar book on Amazon

flylib.com © 2008-2017.
If you may any questions please contact us: flylib@qtcs.net