yank

yank

yank is a simple utility that adds a specified sequence name to a list file.

Here is a sample session with yank, adding the regions making up the coding sequence of embl:hsfau1 to the list cds.list:

% yank Reads a range from a sequence, appends the full USA to a list file Input sequence: em:hsfau1      Begin at position [start]: 782        End at position [end]: 856         Reverse strand [N]: Output file [hsfau1.yank]: cds.list % yank Reads a range from a sequence, appends the full USA to a list file Input sequence: em:hsfau1      Begin at position [start]: 951        End at position [end]: 1095         Reverse strand [N]: Output file [hsfau1.yank]: cds.list     % yank Reads a range from a sequence, appends the full USA to a list file Input sequence: em:hsfau1      Begin at position [start]: 1557        End at position [end]: 1612         Reverse strand [N]: Output file [hsfau1.yank]: cds.list     % yank Reads a range from a sequence, appends the full USA to a list file Input sequence: em:hsfau1      Begin at position [start]: 1787        End at position [end]: 1912         Reverse strand [N]: Output file [hsfau1.yank]: cds.list

Mandatory qualifiers:

[-sequence] (sequence)

Sequence USA.

[-outfile] (outfile)

Output filename.

Advanced qualifiers:

-newfile (boolean)

Overwrite existing output file.



Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases
ISBN: 059600494X
EAN: 2147483647
Year: 2005
Pages: 312

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