domainer reads protein coordinate files and writes domains coordinate files. Here is a sample session with domainer: % domainer Build domain coordinate files Name of scop file for input (embl-like format) [Escop.dat]: /data/scop/Escop.dat Location of coordinate files for input (embl-like format) [./]: /data/cpdb/ Location of coordinate files for output (embl-like format) [./]: Extension of coordinate files (embl-like format) [.pxyz]: Location of coordinate files for output (pdb format) [./]: Extension of coordinate files (pdb format) [.ent]: Name of log file for the embl-like format build [domainer.log1]: log.1 Name of log file for the pdb format build [domainer.log2]: log.2 D3SDHA_ D3SDHB_ D3HBIA_ D3HBIB_ D4SDHA_ D4SDHB_ D4HBIA_ D4HBIB_ D5HBIA_ D5HBIB_ D7HBIA_ D7HBIB_ Mandatory qualifiers:
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