dbiblast indexes a BLAST database created by the NCBI indexing programs (formatdb, pressdb, or setdb) and builds EMBL CD-ROM format index files. Here is a sample session with dbiblast, using a BLAST2 protein database: % dbiblast NCBI : NCBI with | characters GCG : GCG format dbname:entryname SIMPLE : ID and accession ID : entryname UNKNOWN : unknown Entry format [unknown]: gcg Database name: swnew Database directory [.]: /nfs/disk42/pmr/emboss/test/blastp2/ database base filename [swnew]: Release number [0.0]: Index date [00/00/00]: 04/02/00 N : nucleic P : protein ? : unknown Sequence type [unknown]: p 1 : wublast and setdb/pressdb 2 : formatdb 0 : unknown Blast index version [unknown]: 2 Mandatory qualifiers:
Advanced qualifiers:
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