2.3 DDBJ Example Flat File

2.3 DDBJ Example Flat File

Example 2-2 contains a sample sequence entry from DDBJ. This entry contains terms from the DDBJ Field Definitions and the DDBJ/EMBL/GenBank Feature Table, discussed later in this chapter.

Example 2-2. Sample DDBJ entry
LOCUS       HSCDK2MR                1476 bp    RNA     linear   HUM 15-JAN-1992
DEFINITION  H.sapiens CDK2 mRNA.
ACCESSION   X61622
VERSION     X61622.1
KEYWORDS    CDK2 gene; cell cycle regulation protein; cyclin A binding; protein 
            kinase. 
SOURCE      human.
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; 
            Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. 
REFERENCE   1  (bases 1 to 1476)
  AUTHORS   Elledge,S.J. and Spottswood,M.R. 
  TITLE     A new human p34 protein kinase, CDK2, identified by complementation 
            of a cdc28 mutation in Saccharomyces cerevisiae, is a homolog of 
            Xenopus Eg1 
  JOURNAL   EMBO J. 10, 2653-2659(1991). 
  MEDLINE   91330891
REFERENCE   2  (bases 1 to 1476)
  AUTHORS   Elledge,S.J. 
  JOURNAL   Submitted (28-NOV-1991) to the EMBL/GenBank/DDBJ databases. S.J. 
            Elledge, Dept. of Biochemistry, Baylor College of Medicine, 1 Baylor
            Place, Houston, TX 77030, USA 
FEATURES             Location/Qualifiers
     source          1..1476
                     /db_xref="taxon:9606"
                     /organism="Homo sapiens"
                     /cell_line="EBV transformed Human peripheral lymphocyte
                     (B-cell)"
                     /clone_lib="lambda YES-R cDNA library"
                     /clone="pSE1000"
     CDS             1..897
                     /db_xref="SWISS-PROT:P24941"
                     /note="cell division kinase. CDC2 homolog"
                     /gene="CDK2"
                     /function="protein kinase"
                     /protein_
                     /translation="MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVP
                     STAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLI
                     KSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEV
                     VTLWYRAPEILLGSKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTP
                     DEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAAL
                     AHPFFQDVTKPVPHLRL"
BASE COUNT      368 a    372 c    351 g    385 t
ORIGIN
        1 atggagaact tccaaaaggt ggaaaagatc ggagagggca cgtacggagt tgtgtacaaa
       61 gccagaaaca agttgacggg agaggtggtg gcgcttaaga aaatccgcct ggacactgag
      121 actgagggtg tgcccagtac tgccatccga gagatctctc tgcttaagga gcttaaccat
      181 cctaatattg tcaagctgct ggatgtcatt cacacagaaa ataaactcta cctggttttt
      241 gaatttctgc accaagatct caagaaattc atggatgcct ctgctctcac tggcattcct
      301 cttcccctca tcaagagcta tctgttccag ctgctccagg gcctagcttt ctgccattct
      361 catcgggtcc tccaccgaga ccttaaacct cagaatctgc ttattaacac agagggggcc
      421 atcaagctag cagactttgg actagccaga gcttttggag tccctgttcg tacttacacc
      481 catgaggtgg tgaccctgtg gtaccgagct cctgaaatcc tcctgggctc gaaatattat
      541 tccacagctg tggacatctg gagcctgggc tgcatctttg ctgagatggt gactcgccgg
      601 gccctgttcc ctggagattc tgagattgac cagctcttcc ggatctttcg gactctgggg
      661 accccagatg aggtggtgtg gccaggagtt acttctatgc ctgattacaa gccaagtttc
      721 cccaagtggg cccggcaaga ttttagtaaa gttgtacctc ccctggatga agatggacgg
      781 agcttgttat cgcaaatgct gcactacgac cctaacaagc ggatttcggc caaggcagcc
      841 ctggctcacc ctttcttcca ggatgtgacc aagccagtac cccatcttcg actctgatag
      901 ccttcttgaa gcccccgacc ctaatcggct caccctctcc tccagtgtgg gcttgaccag
      961 cttggccttg ggctatttgg actcaggtgg gccctctgaa cttgccttaa acactcacct
     1021 tctagtctta accagccaac tctgggaata caggggtgaa aggggggaac cagtgaaaat
     1081 gaaaggaagt ttcagtatta gatgcactta agttagcctc caccaccctt tcccccttct
     1141 cttagttatt gctgaagagg gttggtataa aaataatttt aaaaaagcct tcctacacgt
     1201 tagatttgcc gtaccaatct ctgaatgccc cataattatt atttccagtg tttgggatga
     1261 ccaggatccc aagcctcctg ctgccacaat gtttataaag gccaaatgat agcgggggct
     1321 aagttggtgc ttttgagaat taagtaaaac aaaaccactg ggaggagtct attttaaaga
     1381 attcggttaa aaaatagatc caatcagttt ataccctagt tagtgttttc ctcacctaat
     1441 aggctgggag actgaagact cagcccgggt gggggt                          
//