polydot compares all sequences in a set of sequences. It then draws a dotplot for each pair of sequences by marking where words (tuples) of a specified length have an exact match in both sequences and optionally reports all identical matches to feature files. Here is a sample session with polydot: % polydot globin.fasta -gtitle="Polydot of globin.fasta" Mandatory qualifiers (bold if not always prompted):
Optional qualifiers:
Advanced qualifiers:
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