distmat calculates the evolutionary distances between every pair of sequences in a multiple alignment. The sequences must be aligned before running this program. Here is a sample session with distmat: % distmat pax.align Creates a distance matrix from multiple alignments Multiple substitution correction methods for proteins 0 : Uncorrected 1 : Jukes-Cantor 2 : Kimura Protein Method to use [0]: 2 Output file [outfile.distmat]: Mandatory qualifiers (bold if not always prompted):
Optional qualifiers (bold if not always prompted):
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